Table 1. Summary metrics of the assembled (circular) and annotated genomes of methicillin-resistant Staphylococcus aureus strains

Ann Clin Microbiol 2025;28(3):15. Complete genome analysis of representative methicillin-resistant Staphylococcus aureus clinical strains prevalent in Korea during 2014-2017

Table 1. Summary metrics of the assembled (circular) and annotated genomes of methicillin-resistant Staphylococcus aureus strains

Strain	HL18888	HL20835	HL17064	HL18807	HL18883	HL21008	HL17078	HL18380	HL16278	HL18840
SCCmec type	II	II	II	II	II	II	IV	IV	IVA	IVA
spa type	t002	t002	t2460	t2460	t9353	t9353	t008	t008	t324	t324
Isolation year	2016	2017	2015	2016	2016	2017	2015	2016	2014	2016
Completeness (%)*	100	100	100	100	100	100	100	100	100	100
Chromosomes	1	1	1	1	1	1	1	1	1	1
Total length (bp)	2,893,276	2,913,324	2,931,169	2,903,929	2,904,018	2,947,630	2,922,932	2,917,999	2,757,377	2,796,963
GC (%)	32.89	32.91	32.98	32.92	32.92	32.93	32.81	32.8	32.82	32.85
CDS	2,923	2,970	2,974	2,905	2,906	3,000	3,026	2,975	2,713	2,766
rRNAs	16	16	16	16	16	16	19	19	16	19
tRNAs	59	59	59	59	59	59	59	59	59	59
ncRNAs	4	4	4	4	4	4	4	4	4	4
GenBank No.	CP080548.1	CP080566.1	CP080560.1	CP080552.1	CP080550.1	CP080562.1	CP080556.1	CP080553.1	CP080564.1	CP080551.1
Plasmids	1	1	1	0	0	1	3	2	1	0
Plasmid length (bp)	24,653	24,653	25,109			25,109	42,253/19,845/3,125	23,058/6,118	3,332
GC (%)	28.5	28.5	29			29	28.5/29/28.5	30.5/28.5	29.5
GenBank No.	CP080549.1	CP080567.1	CP080561.1			CP080563.1	CP080557.1/ CP080559.1/ CP080559.1	CP080554.1/ CP080555.1	CP080565.1
Genome assembly No.	ASM1955137v1	ASM1955141v1	ASM1955094v1	ASM1955131v1	ASM1955103v1	ASM1955109v1	ASM1955117v1	ASM1955123v1	ASM1955135v1	ASM1955087v1

The table was created with analysis of genome statistics of Fasta sequences.
^aCompleteness of genome assembly was analyzed by BUSCO v.5.3.2 with bacteria_odb10 lineage dataset.
Abbreviations: SCCmec, staphylococcal cassette chromosome mec; spa, staphylococcal protein A; bP, base pairs; GC, guanine and cytosine; CDS, coding sequences or protein coding genes; BUSCO, benchmarking universal single-copy ortholog.