Annals of Clinical Microbiology, The official Journal of the Korean Society of Clinical Microbiology

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Indexed in KCI, KoreaMed, Synapse, DOAJ
Open Access, Peer Reviewed
pISSN 2288-0585 eISSN 2288-6850

Search Results for: Jung-Min Kim

Complete genome analysis of representative methicillin-resistant Staphylococcus aureus clinical strains prevalent in Korea during 2014-2017

Original article Harshad Lade1*, Tae-Im Kim1*, Jung-Min Kim1, Yong-Kyun Kim2, Kibum Jeon3, Hyun Soo Kim4, Han-Sung Kim5, Wonkeun Song6, Jae-Seok Kim1 1Department of Laboratory Medicine, Hallym University College of Medicine, Kangdong Sacred Heart Hospital, Seoul, Korea2Department of Laboratory Medicine, Sahmyook Medical Center, Seoul, Korea3Department of Laboratory Medicine, Hallym University College of Medicine, Hangang Sacred Heart Hospital, Seoul, Korea4Department of Laboratory Medicine, Hallym University College of Medicine, Dongtan Sacred Heart Hospital, Hwaseong, Korea5Department of Laboratory Medicine, Hallym University College of Medicine, Hallym University Sacred Heart Hospital, Anyang, Korea6Department of Laboratory Medicine, Hallym University College of Medicine, Kangnam Sacred Heart Hospital, Seoul, Korea *These authors contributed equally to this work. Correspondence to Jae-Seok Kim, E-mail: jaeseok@kdh.or.kr Ann Clin Microbiol 2025;28(3):15. https://doi.org/10.5145/ACM.2025.28.3.4Received on 23 May 2025, Revised on 20 June 2025, Accepted on 30 June 2025, Published on 10 September 2025.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which

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A Case of Whole Genome Analysis of SARS-CoV-2 Using Oxford Nanopore MinION System

Case report Jae-Seok Kim, Sung Hee Chung, Jung-Min Kim, Hyun Soo Kim, Han-Sung Kim, Wonkeun Song Department of Laboratory Medicine, Hallym University College of Medicine, Seoul, Korea Corresponding to Jae-Seok Kim, E-mail:  jaeseok@hallym.ac.kr Ann Clin Microbiol 2021;24(4):135-140. https://doi.org/10.5145/ACM.2021.24.4.4Received on 28 June 2021, Revised on 27 September 2021, Accepted on 11 November 2021, Published on 20 December 2021.Copyright © Korean Society of Clinical Microbiology. Abstract The application of whole genome sequencing on SARS-CoV-2 viral genome is essential for our understanding of the molecular epidemiology and spread of viruses in the community. The portable whole genome sequencer MinION (Oxford Nanopore Technologies, ONT, UK) could be feasibly used in a clinical microbiology laboratory without the need of vast resources or stringent operating conditions. We used the MinION sequencer to analyze the viral genome sequence of one SARS-CoV-2 strain. In June 2020, nasopharyngeal specimen from one patient was subjected to whole-genome analysis using the

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