Annals of Clinical Microbiology, The official Journal of the Korean Society of Clinical Microbiology

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Indexed in KCI, KoreaMed, Synapse, DOAJ
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pISSN 2288-0585 eISSN 2288-6850

Search Results for: Sang Dong Shin

Isolation of Carnobacterium divergens from Blood Culture in Korea : A Case Report and Literature Review

Case report In Hwa Jeong, Gyu Dae Ahn, Namhee Kim, Kyung Hee Kim, Sang Dong Shin, Jin Yeong Han, Gwang Sook Woo Department of Laboratory Medicine, Dong-A University School of Medicine, Busan, Korea Corresponding to Gwang Sook Woo, E-mail: wizard1005@dau.ac.kr Ann Clin Microbiol 2020;23(3):149-153. https://doi.org/10.5145/ACM.2020.23.3.4Received on 13 January 2020, Revised on 23 February 2020, Accepted on 23 February 2020, Published on 20 September 2020.Copyright © Korean Society of Clinical Microbiology. Abstract Carnobacterium is a genus of gram-positive bacilli belonging to the family Lactobacillaceae. Generally, Carnobacterium species are considered nonpathogenic to humans and are mostly found in the natural environment, food, and food packaging. Furthermore, some Carnobacterium species play a bioprotective role in the food industry. Isolation of Carnobacterium from human blood or other sites, such as skin or abscess, has rarely been reported—there are only four published case reports worldwide, and none of them is from Korea. In all the

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Isolation of Carnobacterium divergens from Blood Culture in Korea : A Case Report and Literature Review

PDF Original article Annals of Clinical Microbiology (Ann Clin Microbiol) 2020 September, Volume 23, Issue 3, pages 149-153. https://doi.org/10.5145/ACM.2020.23.3.4 In Hwa Jeong, Gyu Dae Ahn, Namhee Kim, Kyung Hee Kim, Sang Dong Shin, Jin Yeong Han, Gwang Sook Woo Department of Laboratory Medicine, Dong-A University School of Medicine, Busan, Korea Abstract Carnobacterium is a genus of gram-positive bacilli belonging to the family Lactobacillaceae. Generally, Carnobacterium species are considered nonpathogenic to humans and are mostly found in the natural environment, food, and food packaging. Furthermore, some Carnobacterium species play a bioprotective role in the food industry. Isolation of Carnobacterium from human blood or other sites, such as skin or abscess, has rarely been reported—there are only four published case reports worldwide, and none of them is from Korea. In all the reported cases, the patients reported contact with an aqueous environment or were administered nutrition via a parenteral route. Herein, we

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Macrolide-resistant Mycoplasma pneumoniae: laboratory diagnosis and epidemiology

Review Kuenyoul Park1, Heungsup Sung2 1Department of Laboratory Medicine, Hanyang University Seoul Hospital, Hanyang University College of Medicine, Seoul, Korea2Department of Laboratory Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea Correspondence to Heungsup Sung E-mail: sung@amc.seoul.kr Ann Clin Microbiol 2026;29(3):10. https://doi.org/10.5145/ACM.2026.29.3.10Received on 28 April 2026, Revised on 21 May 2026, Accepted on 26 May 2026, Published on 22 June 2026.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Mycoplasma pneumoniae is a leading atypical cause of community-acquired pneumonia in children and adults, and the prevalence of resistance to macrolides, the recommended first-line agents, varies markedly by region. Since the fastidious growth of M. pneumoniae makes phenotypic antimicrobial susceptibility testing impractical for routine use, clinical microbiology laboratories have focused on 23S rRNA gene-targeted molecular detection. This mini-review examines

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Evaluation of VITEK 2 system and VITEK MS system for the identification of Haemophilus species: a diagnostic accuracy study

Original article Yeon Chan Choi1*, Eun-Young Kim1*, Hyun Jin Choi1, Si Hyun Kim2, Eunkyoung You1, Ja Young Lee1, Jihyun Cho3, Seok Hoon Jeong4, Dokyun Kim4, Hyun Soo Kim5, Soo Hyun Kim6, Young Ah Kim7, Young Ree Kim8, Nam Hee Ryoo9, Jong Hee Shin10, Kyeong Seob Shin11, Young Uh12, Jeong Hwan Shin1 1Department of Laboratory Medicine and Paik Institute for Clinical Research, Inje University College of Medicine, Busan, Korea2Department of Biomedical Laboratory Science, Inje University, Gimhae, Korea3Department of Laboratory Medicine, Wonkwang University Medical School, Iksan, Korea4Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, Korea5Department of Laboratory Medicine, Hallym University Dongtan Sacred Heart Hospital, Hallym University College of Medicine, Hwaseong, Korea6Department of Microbiology and Laboratory Medicine, Chonnam National University Medical School, Gwangju, Korea7Department of Laboratory Medicine, National Health Insurance Service Ilsan Hospital, Goyang, Korea8Department of Laboratory Medicine, Jeju National University College of Medicine, Jeju,

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A multicenter study on antimicrobial resistance in bloodstream pathogens isolated in Korea: a survey study

Original article Jung-ah Kim1*, Sae Am Song2*, Sunjoo Kim3, Sunggyun Park4, Kwangsook Woo5, Yu Kyung Kim6 1Department of Laboratory Medicine, Soonchunhyang University Seoul Hospital, Seoul, Korea2Department of Laboratory Medicine, Inje University College of Medicine, Busan, Korea3Department of Laboratory Medicine, Gyeongsang National University College of Medicine, Jinju, Korea.4Departments of Laboratory Medicine, Keimyung University School of Medicine, Daegu, Korea5Department of Laboratory Medicine, Dong-A University College of Medicine, Busan, Korea6Department of Clinical Pathology, School of Medicine, Kyungpook National University, Daegu, Korea *These authors contributed equally to this work. Correspondence to Sunjoo Kim, E-mail: sjkim8239@hanmail.net Ann Clin Microbiol 2025;28(2):10. https://doi.org/10.5145/ACM.2025.28.2.4Received on 30 May 2025, Revised on 12 June 2025, Accepted on 12 June 2025, Published on 27 June 2025.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Background: Bacterial antimicrobial resistance (AMR) is a major

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Mock communities to assess biases in next-generation sequencing of bacterial species representation

Original article Younjee Hwang1,2*, Ju Yeong Kim1,3*, Se Il Kim4,5, Ji Yeon Sung1,6, Hye Su Moon1, Tai-Soon Yong3, Ki Ho Hong1, Hyukmin Lee1, Dongeun Yong1 1Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, Korea2Brain Korea 21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul, Korea3Department of Tropical Medicine, Institute of Tropical Medicine and Arthropods of Medical Importance Resource Bank, Yonsei University College of Medicine, Seoul, Korea4Division of Chemical and Medical Metrology, Center for Bioanalysis, Korea Research Institute of Standards and Science, Daejeon, Korea5Convergent Research Center for Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon, Korea6Roche Diagnostics Korea, Seoul, Korea*These authors contributed equally to this work. Correspondence to Dongeun Yong, E-mail: deyong@yuhs.ac Ann Clin Microbiol 2025;28(1):3. https://doi.org/10.5145/ACM.2025.28.1.3Received on 31 December 2024, Revised on 6 March 2025, Accepted on 10 March 2025, Published on 20 March 2025.Copyright © Korean

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Fungal identification based on the polyphasic approach: a clinical practice guideline

Review article Jayoung Kim Department of Laboratory Medicine, International St. Mary’s Hospital, College of Medicine, Catholic Kwandong University, Incheon, Korea Corresponding to Jayoung Kim, E-mail: lmkjy7@gmail.com Ann Clin Microbiol 2024;27(4):221-230. https://doi.org/10.5145/ACM.2024.27.4.2Received on 18 November 2024, Revised on 10 December 2024, Accepted on 10 December 2024, Published on 20 December 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Taxonomy includes classification, nomenclature, and identification. Identification assigns unknown fungi to species based on their strain characteristics. Traditionally, fungal taxonomy relied on morphological, physiological, and biochemical traits. However, advancements in molecular phylogeny, especially multilocus sequence analysis (MLSA), have revolutionized fungal taxonomy. MLSA combines phylogenetic and genetic approaches. Although effective, MLSA may not fully reflect biodiversity or distinguish between closely related species. Polyphasic taxonomy integrates genotypic, phylogenetic, chemotaxonomic, and phenotypic data into a consensus

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Current epidemiology and implication for microbiological diagnosis of cryptococcal infections in Korea

Review article Myeong Hee Kim Department of Laboratory Medicine, Kyung Hee University College of Medicine and Kyung Hee University Hospital at Gangdong, Seoul, Korea Corresponding to Myeong Hee Kim, E-mail: meikim96@hanmail.net Ann Clin Microbiol 2024;27(4):257-265. https://doi.org/10.5145/ACM.2024.27.4.5Received on 7 October 2024, Revised on 12 November 2024, Accepted on 14 November 2024, Published on 20 December 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Cryptococcosis is a major invasive fungal infection affecting both immunocompromised and immunocompetent hosts worldwide and is mainly caused by Cryptococcus neoformans and Cryptococcus gattii. C. neoformans accounts for 90% of all infections and primarily causes central nervous system infections. Although C. gattii is primarily found in tropical and subtropical regions, infections have recently been reported in temperate areas such as Korea. Genetic studies in Korea indicated that most

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Season and Temperature Effects on Bloodstream Infection Incidence in a Korean Tertiary Referral Hospital

Original article Young-Suk Sohn1, Jung-Hyun Byun2, Young Ah Kim3, Dong-Chun Shin4, Kyungwon Lee1 1Department of Laboratory Medicine, Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, 2Department of Laboratory Medicine, Gyeongsang National University Hospital, Gyeongsang National University College of Medicine, Jinju, 3Department of Laboratory Medicine, National Health Insurance Service Ilsan Hospital, Goyang, 4Department of Environmental Health Graduate School of Public Health, Yonsei University, Seoul, Korea Corresponding to Young Ah Kim, E-mail: yakim@nhimc.or.kr Ann Clin Microbiol 2020;23(1):33-43. https://doi.org/10.5145/ACM.2020.23.1.33Received on 8 July 2019, Revised on 23 August 2019, Accepted on 23 August 2019, Published on 20 March 2019.Copyright © Korean Society of Clinical Microbiology. Abstract Background: The weather has well-documented effects on infectious disease and reports suggest that summer peaks in the incidences of gram-negative bacterial infections among hospitalized patients. We evaluated how season and temperature changes affect bloodstream infection (BSI) incidences of major pathogens to understand BSI trends with

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Anisakidosis in humans and animals and detection of anisakid larvae in fish and cephalopods in Korea: a literature review (1971-2022)

Review article Jong-Yil Chai1, Woon-Mok Sohn2, Bong-Kwang Jung3 1Department of Tropical Medicine and Parasitology, Seoul National University College of Medicine, Seoul2Department of Parasitology and Tropical Medicine, Gyeongsang National University College of Medicine, Jinju;3MediCheck Research Institute, Korea Association of Health Promotion, Seoul, Korea Corresponding to Jong-Yil Chai, E-mail: cjy@snu.ac.kr Ann Clin Microbiol 2024;27(2):93-130. https://doi.org/10.5145/ACM.2024.27.2.6Received on 3 April 2024, Revised on 23 April 2024, Accepted on 29 April 2024, Published on 20 June 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Human anisakiasis (or anisakidosis) is a disease caused by the ingestion of marine fish or cephalopods infected with anisakid nematode larvae of the genera Anisakis, Pseudoterranova, Contracaecum, and Hysterothylacium. Anisakiasis is a clinically important disease that often manifests as an acute abdominal syndrome requiring emergency medical attention and care. In Korea, at

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