Fig. 1. Graphic sequence view of NCBI Genome Workbench for D614G variant in S gene. MinION sequencer is known as a next-generation sequencer with less accuracy, but it revealed sufficient accuracy for the mutation with amplicon-based approach. NCBI, The National Center for Biotechnology Information
Ann Clin Microbiol 2021;24:135-140. A Case of Whole Genome Analysis of SARS-CoV-2 Using Oxford Nanopore MinION System Download image
Table 1. Genomic and amino acid changes of the SARS-CoV-2 positive specimen
Ann Clin Microbiol 2021;24:135-140. A Case of Whole Genome Analysis of SARS-CoV-2 Using Oxford Nanopore MinION System Download table Genomic change Amino acid change Gene/region 241 C -> T 5′-UTR 1059 C -> T T265I orf1ab 3037 C -> T F924 orf1ab 11916 C -> T Y3884L orf1ab 14408 C -> T P4715L orf1ab 16650 […]
Table 3. Distribution of emm clusters and emm genotypes
Ann Clin Microbiol 2021;24:127-134. emm Types and Clusters of Group A Streptococcus Causing Acute Pharyngitis in Changwon Korea, 2018–2019 Download table emm clusters emm types No. (%) E4 emm89 12 (20.3) emm28 7 (11.9) A-C4 emm12 10 (16.9) E1 emm4 8 (13.6) A-C5 emm3 6 (10.2) E6 emm75 5 (8.5) M6 emm6 5 (8.5) […]
Table 2. Comparison of distribution (%) of emm types in four studies in Korea
Ann Clin Microbiol 2021;24:127-134. emm Types and Clusters of Group A Streptococcus Causing Acute Pharyngitis in Changwon Korea, 2018–2019 Download table emm types Period and regions studied 2014–2018 All regions [24] 2008–2015 Gwangju [25] 2017 Changwon [22] 2018–2019 Changwon* emm89 14.9 2.3 12.6 20.3 emm12 12.8 5.2 3.2 16.9 emm4 14.2 35.6 53.2 13.6 emm28 […]
Table 1. Isolation rate (%) of group A streptococci (GAS) according to age and sex
Ann Clin Microbiol 2021;24:127-134. emm Types and Clusters of Group A Streptococcus Causing Acute Pharyngitis in Changwon Korea, 2018–2019 Download table Age (yr) Male Female Total No. GAS % No. GAS % No. GAS % 1 5 0 0.0 1 0 0.0 6 0 0.0 2 7 0 0.0 10 0 0.0 17 0 0.0 […]
Table 5. Comparison of trends in antimicrobial susceptibility of Campylobacter spp.
Ann Clin Microbiol 2021;24:115-126. Trends in Isolation and Antimicrobial Susceptibility of Enteropathogenic Bacteria in 2011-2019 at a Korean Tertiary Care Hospital Compared with Data in the Preceding Reports Download table Antimicrobial Agents % of Isolates Susceptible 1981-1982 (n=29) 1986-1991 (n=127) 1994-1998 (n=138) 2001-2005 (n=41) 2006-2010* (n=39) 2011-2015 (n=72) 2016-2019 (n=60) Erythromycin 100.0 NT 92.0 95.1 […]
Table 4. Comparison of trends in antimicrobial susceptibility of nontyphoidal Salmonella
Ann Clin Microbiol 2021;24:115-126. Trends in Isolation and Antimicrobial Susceptibility of Enteropathogenic Bacteria in 2011-2019 at a Korean Tertiary Care Hospital Compared with Data in the Preceding Reports Download table Year No. of patients % of isolates susceptible to: AMP CHL SXT CTX CAZ FQN* 1979 – 1983 211 98 99 100 NT NT NT […]
Table 3. Number of patients with nontyphoidal Salmonella and Campylobacter spp. by age group
Ann Clin Microbiol 2021;24:115-126. Trends in Isolation and Antimicrobial Susceptibility of Enteropathogenic Bacteria in 2011-2019 at a Korean Tertiary Care Hospital Compared with Data in the Preceding Reports Download table Organism No. of patients by age group (yr) ≤ 5 6-9 10-19 20-29 30-39 40-49 50-59 ≥ 60 Total Nontyphoidal Salmonella 118 27 24 9 […]
Table 2. Number of patients with nontyphoidal Salmonella and Campylobacter spp. isolation by month in 2011-2019
Ann Clin Microbiol 2021;24:115-126. Trends in Isolation and Antimicrobial Susceptibility of Enteropathogenic Bacteria in 2011-2019 at a Korean Tertiary Care Hospital Compared with Data in the Preceding Reports Download table Month No. of patient with: Nontyphoidal Salmonella (%) Campylobacter spp. (%) January 12 (4.6) 5 (3.8) February 5 (1.9) 5 (3.8) March 14 (5.4) 14 […]
Table 1. Comparison of trends in isolation of enteropathogenic bacteria at a tertiary-care hospital
Ann Clin Microbiol 2021;24:115-126. Trends in Isolation and Antimicrobial Susceptibility of Enteropathogenic Bacteria in 2011-2019 at a Korean Tertiary Care Hospital Compared with Data in the Preceding Reports Download table Characteristic Period of data acquisition* 1969-1978 1979-1988 1989-1998 2001-2010 2011-2019 No. of specimen cultured 13,412 37,846 51,441 60,714 48,476 No. of positive specimen 1,732 3,503 […]