Annals of Clinical Microbiology, The official Journal of the Korean Society of Clinical Microbiology

6

Weeks in Review

4

Weeks to Publication
Indexed in KCI, KoreaMed, Synapse, DOAJ
Open Access, Peer Reviewed
pISSN 2288-0585 eISSN 2288-6850

Search Results for: So Min Kim

A multicenter study on antimicrobial resistance in bloodstream pathogens isolated in Korea: a survey study

Original article Jung-ah Kim1*, Sae Am Song2*, Sunjoo Kim3, Sunggyun Park4, Kwangsook Woo5, Yu Kyung Kim6 1Department of Laboratory Medicine, Soonchunhyang University Seoul Hospital, Seoul, Korea2Department of Laboratory Medicine, Inje University College of Medicine, Busan, Korea3Department of Laboratory Medicine, Gyeongsang National University College of Medicine, Jinju, Korea.4Departments of Laboratory Medicine, Keimyung University School of Medicine, Daegu, Korea5Department of Laboratory Medicine, Dong-A University College of Medicine, Busan, Korea6Department of Clinical Pathology, School of Medicine, Kyungpook National University, Daegu, Korea *These authors contributed equally to this work. Correspondence to Sunjoo Kim, E-mail: sjkim8239@hanmail.net Ann Clin Microbiol 2025;28(2):10. https://doi.org/10.5145/ACM.2025.28.2.4Received on 30 May 2025, Revised on 12 June 2025, Accepted on 12 June 2025, Published on 27 June 2025.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Background: Bacterial antimicrobial resistance (AMR) is a major

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Infection control and re-emergence of pertussis in South Korea (secondary publication)

Review article Hyun Joo Jung Department of Pediatrics, Ajou University School of Medicine, Ajou University Hospital, Suwon, Korea Correspondence to Hyun Joo Jung, E-mail: free1109@ajou.ac.kr This article is a secondary publication of the original work published in Korean in the Korean Journal of Healthcare-associated Infection Control and Prevention (2024;29(2):110–115, https://doi.org/10.14192/kjicp.2024.29.2.110). This English version has been translated and published in Annals of Clinical Microbiology with the permission of the editors of both the Korean Journal of Healthcare-associated Infection Control and Prevention and the Annals of Clinical Microbiology. This secondary publication complies with the conditions set forth in the “Recommendations for the Conduct, Reporting, Editing, and Publication of Scholarly Work in Medical Journals” by the International Committee of Medical Journal Editors (ICMJE), and serves to enhance accessibility and value by making the content available to a broader international readership through English translation. Ann Clin Microbiol 2025;28(2):8. https://doi.org/10.5145/ACM.2025.28.2.2Received on 15 May 2025, Revised

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Isolation frequency and antimicrobial susceptibilities of Bacillus species in a tertiary care hospital in Korea in the past four years (2020–2024): a retrospective surveillance study

Original article Kwangjin Ahn1, Hyunju Choi1, Taesic Lee2, Young Uh1 1Department of Laboratory Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea2Department of Family Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea Correspondence to Young Uh, E-mail: u931018@yonsei.ac.kr Ann Clin Microbiol 2025;28(2):7. https://doi.org/10.5145/ACM.2025.28.2.1Received on 4 March 2025, Revised on 7 April 2025, Accepted on 14 April 2025, Published on 19 May 2025.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Background: Identifying Bacillus spp. and performing antimicrobial susceptibility testing (AST) is challenging because of their diversity and limited clinical laboratory resources. We investigated the isolation frequency and antimicrobial susceptibility of Bacillus spp. over a 4-year period. Methods: Bacillus isolates collected between 2020 and 2024 were identified using matrixassisted laser desorption ionization-time of flight mass spectrometry, and AST was performed using

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Composition, developmental patterns, and pathological associations of the human gut mycobiome

Review article Eun Ha Lee1, Chi Rac Hong2 1Smart Farm Research Center, Korea Institute of Science and Technology, Gangneung2Department of Food Science and Biotechnology, Seoul National University of Science and Technology, Seoul, Korea Corresponding to Eun Ha Lee, E-mail: ehlee@kist.re.kr Ann Clin Microbiol 2025;28(1):2. https://doi.org/10.5145/ACM.2025.28.1.2Received on 10 October 2024, Revised on 21 November 2024, Accepted on 27 November 2024, Published on 30 December 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Purpose: The human gut mycobiome comprises diverse fungal species and plays a crucial role in health and disease, despite its relatively low abundance compared to bacterial populations. This review provides an overview of the mycobiome’s composition, developmental patterns, and dysbiosis in various pathological conditions. As well, the complex interactions of fungal communities within the gut microbiome are discussed. Current content:

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Risk of inaccurate species identification by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and of false carbapenem resistance by automated susceptibility analysis of Enterobacter spp.

Brief communication Young Ah Kim Department of Laboratory Medicine, National Health Insurance Service Ilsan Hospital, Goyang, Korea Corresponding to Young Ah Kim, E-mail: yakim@nhimc.or.kr Ann Clin Microbiol 2024;27(4):267-270. https://doi.org/10.5145/ACM.2024.27.4.6Received on 25 August 2024, Revised on 24 October 2024, Accepted on 10 November 2024, Published on 20 December 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Enterobacter species were isolated from the sputum of an 84-year-old female patient with fever, chills, cellulitis in the right elbow, and pyogenic arthritis in the left shoulder. The bacteria were identified using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and whole-genome sequencing (WGS). This strain was defined as a carbapenem-resistant Enterobacterales (CRE) by the MicroScan NG MIC 44 panel without applying the revised guidelines of the Korea Disease Control and Prevention Agency properly. MALDI-TOF

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Seasonality and epidemiological trends in species distribution and antifungal susceptibility of Candida species isolated from various clinical specimens conducted during 2011–2022, Korea: a retrospective surveillance study

Original article Seo Young Hwang, Young Kwan Lim, Kye Won Choe, Young ho Choi, Mi-Kyung Lee Department of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Korea Corresponding to Mi-Kyung Lee, E-mail: cpworld@cau.ac.kr Ann Clin Microbiol 2024;27(3):185-196. https://doi.org/10.5145/ACM.2024.27.3.6Received on 2 February 2024, Revised on 8 September 2024, Accepted on 9 September 2024, Published on 20 September 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Background: As most Candida species cause opportunistic infections, it is helpful for patient care to determine species name of Candida spp. and their distribution in both sterile and non-sterile specimens. We aimed to investigate trends in the distribution of Candida species isolated from a hospital in Korea, along with their antifungal susceptibilities and seasonal variations. Methods: This study was conducted at the Chung-Ang University Hospital and included 8,760 different clinical specimens from

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Verification of the Mycoplasma IST3 for urogenital mycoplasma culture in comparison to the Mycoplasma IST2

Original article Seungtaek Lim, Seunghwan Seol, Eun Jeong Won, Bosung Park, Heungsup Sung, Mi-Na Kim Department of Laboratory Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea Corresponding to Mi-Na Kim, E-mail: mnkim@amc.seoul.kr Ann Clin Microbiol 2024;27(3):205-214. https://doi.org/10.5145/ACM.2024.27.3.4Received on 13 August 2024, Revised on 30 August 2024, Accepted on 3 September 2024, Published on 20 September 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Background: Unlike the Mycoplasma IST2 kit (bioMérieux), the Mycoplasma IST3 kit has been updated to comply with the standardized antimicrobial susceptibility test (AST) method for Ureaplasma spp. (Up) and Mycoplasma hominis (Mh). We aimed to verify the use of the Mycoplasma IST3 kit for genital mycoplasma cultures. Methods: From September 2023 to January 2024, the R1 medium remaining after inoculation with IST2 was refrigerated until the next

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Malaria diagnostics: from traditional techniques to cutting-edge solutions

Review article Jin-Hee Han, Eun-Taek Han Department of Medical Environmental Biology and Tropical Medicine, Kangwon National University School of Medicine, Chuncheon, Korea Corresponding to Eun-Taek Han, E-mail: ethan@kangwon.ac.kr Ann Clin Microbiol 2024;27(3):155-170. https://doi.org/10.5145/ACM.2024.27.3.2Received on 31 July 2024, Revised on 14 August 2024, Accepted on 16 August 2024, Published on 9 September 2024.Copyright © Korean Society of Clinical Microbiology.This is an Open Access article which is freely available under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/). Abstract Recent advancements in malaria diagnostics have revolutionized the detection and management of this deadly disease. From traditional microscopy to rapid diagnostic tests and currently, to cutting-edge molecular techniques, such as isothermal amplification and different types of polymerase chain reactions, significant progress has been witnessed in enhancing the sensitivity, specificity, and accessibility of diagnostic tools. These innovations have enabled rapid and more accurate detection of malarial parasites, especially in regions with limited

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Evaluating the Use of Distilled Water for Washing Sodium Hydroxide in Mycobacterial Culture

Original article Hae-Gyeong Baek1, Hyun-Mi Ko2, Myung-Hee Lee1 1Department of Laboratory Medicine, Kwangju Christian Hospital, Gwangju, 2Dental Science Research Institute, Department of Oral Anatomy, School of Dentistry, Chonnam National University, Gwangju, Korea. Corresponding to Myung-Hee Lee, E-mail: purunee0820@naver.com Ann Clin Microbiol 2020;23(4):201-210. https://doi.org/10.5145/ACM.2020.23.4.5Received on 8 October 2020, Revised on 3 November 2020, Accepted on 2 December 2020, Published on 20 December 2020.Copyright © Korean Society of Clinical Microbiology. Abstract Background: Respiratory specimens subjected to mycobacterial detection were initially pre-treated with N-acetyl-L-cysteine-sodium hydroxide (NALC-NaOH) to remove the mucus and normal flora. Next, they were washed and neutralized with phosphate-buffered solution (PBS). The effectiveness of distilled water (DW) compared to PBS as a washing neutralizer during identification of mycobacteria was evaluated in this study. Methods: We analyzed the results of mycobacterial test conducted at a general hospital in Gwangju from October 2016 to September 2018. PBS and DW were used as a

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Evaluation of the Performance of ASTA MicroIDSys, a Novel Matrix-Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry System, in Identification of Bacterial Clinical Isolates

Original article Changseung Liu1*, Eunjung Lee2*, Dokyun Kim1, Seok Hoon Jeong1 1Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, 2Department of Clinical Pathology, Sangji University College of Science, Wonju, Korea *These authors contributed equally to this work. Corresponding to Dokyun Kim, E-mail: kyunsky@yuhs.ac Ann Clin Microbiol 2020;23(3):135-148. https://doi.org/10.5145/ACM.2020.23.3.3Received on 31 January 2020, Revised on 10 April 2020, Accepted on 10 April 2020, Published on 20 September 2020.Copyright © Korean Society of Clinical Microbiology. Abstract Background: We evaluated the performance of ASTA MicroIDSys (ASTA, Korea) and Bruker Biotyper (Bruker Daltonics, Germany) systems in the identification of bacterial isolates from clinical microbiology laboratory specimens during the study period. In addition, species for which the identification accuracy using MALDI-TOF MS systems was previously reported to be poor were also identified by comparing the MS results with those obtained using molecular identification. Methods: A total of

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