Fig. 2. Microbiome of CAPD fluid with 1% cut off of relative abundance.
Ann Clin Microbiol 2020;23:1-10. Application of 16S rRNA Gene-Targeted Next-Generation Sequencing for Bacterial Pathogen Detection in Continuous Ambulatory Peritoneal Dialysis Peritonitis
Fig. 1. Composition of gDNA Mock V34 (1707_C) and MiSeq QC (1903_C) (A), the principal coordinates analysis with CAPD fluid samples with QC controls in each run (B).
Ann Clin Microbiol 2020;23:1-10. Application of 16S rRNA Gene-Targeted Next-Generation Sequencing for Bacterial Pathogen Detection in Continuous Ambulatory Peritoneal Dialysis Peritonitis (A) (B)
Table 1. The comparison of the two methods (culture versus NGS) for the diagnosis of CAPD peritonitis pathogens
Ann Clin Microbiol 2020;23:1-10. Application of 16S rRNA Gene-Targeted Next-Generation Sequencing for Bacterial Pathogen Detection in Continuous Ambulatory Peritoneal Dialysis Peritonitis No Culture NGS (> 10 % relative abundance) Read count Infection Antibiotics* Catheter removal Clear up on day 10 Relapse within 2 months CAPD01 Staphylococcus epidermidis Staphylococcus spp. (20.4 %) 14,841 yes cefazolin,tobramycin,vancomycin yes […]
Application of 16S rRNA Gene-Targeted Next-Generation Sequencing for Bacterial Pathogen Detection in Continuous Ambulatory Peritoneal Dialysis Peritonitis
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